PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0374s0029.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 410aa    MW: 45615.9 Da    PI: 9.2385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0374s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18127177256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Kalax.0374s0029.1.p 127 LYRGVRQRH-WGKWVAEIRLPRD---RTRLWLGTFDTAEDAAMAYDRQAFKLRGE 177
                          59******9.**********966...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.36E-32126185No hitNo description
SMARTSM003801.5E-38127190IPR001471AP2/ERF domain
PROSITE profilePS5103222.879127184IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23127185IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-31127185IPR001471AP2/ERF domain
PfamPF008473.2E-12128177IPR001471AP2/ERF domain
PRINTSPR003676.8E-11128139IPR001471AP2/ERF domain
PRINTSPR003676.8E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MATSSDQNDM DRYGRSPDRQ NPYQFHQGQQ IPLHPSSSAS RSVFPFALDA SQLQFRQQQQ  60
QQHCSIAYYP PQTLQQQQQQ LLNGDLATMG AALTPRHHQM LMMMNRVGVQ QKTSSLLRPQ  120
PINTTKLYRG VRQRHWGKWV AEIRLPRDRT RLWLGTFDTA EDAAMAYDRQ AFKLRGENAR  180
LNFPERFLNK ETLISTAPTS PSSTPARSNP APNSFHKLEE PSKEEEEPDL SQVANNATGA  240
NTNECVADKK EFVWGDMAGA WFNTIPAGWC PGSPISDNLE ATNHLLLLPN PLPSSAFGQH  300
NEIAELSTAC ELRRQLNNLG AAASTSSSSS NSCSFLWKDP HSTSRRQPSS IQTEADARQR  360
RGQALSAVVS ALLSSPRRSS PNQLVAYCPE TPDALLSSRL SPRSIRRPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20126186162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A6e-20126186465ATERF1
2gcc_A6e-20126186465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007043551.17e-72AP2/ERF domain-containing transcription factor, putative
TrEMBLA0A061E4178e-72A0A061E417_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGPOPTR_0019s13330.11e-64(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.13e-44ERF family protein